PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610139.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 293aa    MW: 32668.8 Da    PI: 5.4999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610139.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g W+t +++ g++R++k+c++rw +yl
   XP_013610139.1 14 KGAWTPEEDQKLIAYIQRHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 61
                     79********************************************97 PP

2Myb_DNA-binding50.54.6e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +TteEd+ +++++++ G++ W++Ia ++  gRt++++k++w++ 
   XP_013610139.1  67 RGEFTTEEDDTIIKLHALKGNK-WAAIATYLA-GRTDNEIKNYWNTN 111
                      899*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.169961IPR017930Myb domain
SuperFamilySSF466896.74E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
CDDcd001672.86E-101661No hitNo description
PROSITE profilePS5129424.96962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2565117IPR009057Homeodomain-like
SMARTSM007176.1E-1666114IPR001005SANT/Myb domain
PfamPF002496.6E-1567112IPR001005SANT/Myb domain
CDDcd001673.75E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVRTPCCKEE GIKKGAWTPE EDQKLIAYIQ RHGEGGWRTL PEKAGLKRCG KSCRLRWANY  60
LRPDIKRGEF TTEEDDTIIK LHALKGNKWA AIATYLAGRT DNEIKNYWNT NLKKRLKQKG  120
IDPTTHKPIN STDQTGIGPK NLKRSSSGSA RVLNRVASKY AVDLNRDLVT GIIIGNSTII  180
TQNSEVENST TILLNKMSTS SGFSDNCSFS DGFPEFFSNQ EISDMSMSDD HVGLMEELKG  240
MLSYDNAVPG EIKGSPEANI ADEMEFLDSW NVEDDLDLEK FVSSLDSSIG VFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9461810.0JX946181.1 Eruca vesicaria subsp. sativa MYB34 protein (MYB34-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610140.10.0PREDICTED: transcription factor MYB34-like
RefseqXP_013610139.10.0PREDICTED: transcription factor MYB34-like
SwissprotO643991e-148MYB34_ARATH; Transcription factor MYB34
TrEMBLA0A078DD490.0A0A078DD49_BRANA; BnaC09g05060D protein
TrEMBLA0A0D3E1N50.0A0A0D3E1N5_BRAOL; Uncharacterized protein
STRINGBra035954.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93311637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.11e-141myb domain protein 34